PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G260200.1.p
Common NameSb09g030930, SORBIDRAFT_09g030930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 239aa    MW: 25950.8 Da    PI: 7.9251
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G260200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12250455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          +h ++Er+RR+++N+ +  Lr+l P +   + k+ + a+i   A+e+Ik+Lq
  Sobic.009G260200.1.p  2 SHIAVERNRRRQMNEHLKVLRSLTPGL---YIKRGDQASIIGGAIEFIKELQ 50
                          89*************************...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.31E-12154No hitNo description
SuperFamilySSF474594.45E-16167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.135149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-12455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009913Biological Processepidermal cell differentiation
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKV LRSLTPGLYI KRGDQASIIG GAIEFIKELQ QVLESLEARK  60
KRRSGGSFIS RTSSSPSPTP SPRSHFLSSG SSSAASSSTT TMATPSPPVA TTTMIKELAA  120
CCNSAVADVE AKISGSNVLL RTLSRRIPGQ AVRMIAVLEG LHLEVLHLNI STMEDTVLHS  180
FVLKIGLECQ LSVEDLAYEV QQTFVVVCCR DGDLELPEPA DQSQENHRLM MYSSAMAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269691e-106KJ726969.1 Zea mays clone pUT3670 bHLH transcription factor (bHLH82) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440387.11e-143hypothetical protein SORBIDRAFT_09g030930
SwissprotQ9M8K64e-77MUTE_ARATH; Transcription factor MUTE
TrEMBLC5YX381e-143C5YX38_SORBI; Putative uncharacterized protein Sb09g030930
STRINGSb09g030930.11e-143(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP111443441
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-61bHLH family protein